US-Flexalign prot

Alignment result for job prot

********************************************************************
 * US-Flexalign (Version 20260908)                                  *
 * Flexible Structure Alignment of Proteins and Nucleic Acids       *
 * Reference: Y Zhu, S Yan, Y Zhang, C Zhang (2026)                 *
 * Please email comments and suggestions to cx.zhang2@siat.ac.cn    *
 ********************************************************************

Name of Structure_1: protA.pdb:_ (to be superimposed onto Structure_2)
Name of Structure_2: protB.pdb:_
Length of Structure_1: 525 residues
Length of Structure_2: 545 residues

Aligned length= 441, RMSD=   2.00, Seq_ID=n_identical/n_aligned= 0.193
TM-score= 0.81422 (normalized by length of Structure_1: L=525, d0=8.11)
TM-score= 0.78576 (normalized by length of Structure_2: L=545, d0=8.23)
(You should use TM-score normalized by length of the reference structure)

([0-9,a-z,A-Z] denote different aligned fragment pairs separated by different hinges)
YEQDK--------TYKITVLHTNDHHGHFWRNE-----------------------------------------------------YGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGCNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRT-GADFAVMSGGGIRDSIEAG-DISYKNVLKVQPFG-NVVVYADMTGKEVIDYLTAVAQMKP-------DSGAYPQFANVSFVAK--D-G-K-LNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPRLDNKCGYV-NTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ----------
             00000000000000000000                                                     00000000000000000000000000000000000000000000000000000000000000000 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000000000000000          0000000000  0000000000000 0                000000000000000000000000000000000000000000000              0   000000000000000000000001111111111111    11111111111111111111 1111111111111111111 11111111111111 1111111111111111111111111       1111111111111111  1 1 1 1111111111111111111111 111       111111111 11111111111111111111111  111111111          
-----RSLYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSH-WEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARA-EGANAVVLLSHNGMQ----------LDAALAERIR--GIDLILSGHTHDL-T----------------PRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLA--------------E---HLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYK----RDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAY-GGR-------LQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVR--PEPNVKVIGRNYRLPEVTG

#Total CPU time is  2.62 seconds

Superposition (Structure_1 in color and Structure_2 in white/black)

(water of Structure_1 and Structure_2 in blue and red, respectively;
non-water ligand of Structure_1 and Structure_2 in cyan and pink, respectively).

Result download

Structure_1 (before superposition): protA.pdb.
Structure_2 (before superposition): protB.pdb.
Structure_1 superposed to Structure_2 (with Structure_2): prot.pdb.
Structure_1 superposed to Structure_2 (without Structure_2): protsuper.pdb.

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