******************************************************************** * US-Flexalign (Version 20260908) * * Flexible Structure Alignment of Proteins and Nucleic Acids * * Reference: Y Zhu, S Yan, Y Zhang, C Zhang (2026) * * Please email comments and suggestions to cx.zhang2@siat.ac.cn * ******************************************************************** Name of Structure_1: rnaA.pdb:A (to be superimposed onto Structure_2) Name of Structure_2: rnaB.pdb:A Length of Structure_1: 165 residues Length of Structure_2: 167 residues Aligned length= 155, RMSD= 1.61, Seq_ID=n_identical/n_aligned= 0.968 TM-score= 0.88375 (normalized by length of Structure_1: L=165, d0=5.20) TM-score= 0.87413 (normalized by length of Structure_2: L=167, d0=5.24) (You should use TM-score normalized by length of the reference structure) ([0-9,a-z,A-Z] denote different aligned fragment pairs separated by different hinges) --cgcuucucggcc-uuuug--gc---uaagaucaaguguaguaucuguucuuaucaguuuaauaucugauguccucucgaggacggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc 111111111111 1 00 00 000000 0000000000000000000000000000000000000000000000002222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 aucgcuucucggccuu----uuggcuaag-aucaag-uguaguaucuguucuuaucaguuuaauaucugauguccucucgaggacggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc #Total CPU time is 0.20 seconds
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(water of Structure_1 and Structure_2 in blue and red, respectively; non-water ligand of Structure_1 and Structure_2 in cyan and pink, respectively). |